PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco025349.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family FAR1
Protein Properties Length: 409aa    MW: 46505.6 Da    PI: 8.7484
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco025349.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.14.5e-26100191190
         FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  +fYn+YA ++GFs+rk++++k  k+++ +t  +++Cskeg+ +++++   ++ +++ + trtgCka++++k++++gkw+vt++++eHnH l 
  Aco025349.1 100 SFYNAYALKTGFSIRKASHYKAkKKDEMVTGLHLTCSKEGHYKPRHEIeVDDPQKEMQYTRTGCKAHIRIKMTSSGKWKVTRFVKEHNHVLI 191
                  5*******************99567788999************9998745667788999******************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-24100191IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
CPFMEGVTEE ERSGKVDNRT NDKEAGMTTN NIQFTQFQDQ EPENLMANLS YIENMEMNSP  60
LIEKSQLDQE GPILLVADNE CLGDEPFIGL EFKDADHAYS FYNAYALKTG FSIRKASHYK  120
AKKKDEMVTG LHLTCSKEGH YKPRHEIEVD DPQKEMQYTR TGCKAHIRIK MTSSGKWKVT  180
RFVKEHNHVL INSPSKSRFL RSQRSMTKQQ KDLVRMLSEQ NISSSQIMSF IAAREGGAHN  240
VRFTRKDLSN VRRSFNIQSI QHEAMGDSMH AKAIRSNALS QQVQEIVHQG AKSFGSFELI  300
CQLIKRVVEE IVSYNQASNE IQGKEVEEFN VVPLTQTSDL DVAMKDPPQS QCKGKRKPQR  360
FKPSAEKRAK KFRTCAKCKK KGQNVRTCKE VAPGDAYFDV DVNESNSE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.25e-26FAR1 family protein